Accelerate Proteomics Research with Smart Automation

Modern proteomics research produces vast quantities of complex data — and managing it all manually slows you down. Imagine transforming your work with a seamless, automated solution that not only accelerates data acquisition but also automates analysis and provides secure data management. Thermo Fisher Scientific are supporting researchers with a Proteomics Software Solution that delivers the future of proteomics, with innovation meeting automation to elevate your research to new heights. By leveraging the solution, featuring Thermo Scientific Proteome Discoverer software and Thermo Scientific Ardia Platform, you get a secure, connected environment that automates repetitive tasks, streamlines workflows, and accelerates analysis — whether you’re in the lab or working remotely.

Thermo Fisher Scientific: Accelerate Proteomics Research with Smart Automation

What is the Proteomics software solution?

At its core, the solution combines powerful mass spectrometry data analysis with centralized data management and processing. This integrated setup means your data flows directly from the instrument to the secure, central storage where automated processes immediately launch data processing and securely store the results — no manual steps needed.

Thermo Fisher Scientific: Ardia proteomics process

Because data storage and compute resources are co-located within the Ardia Platform, you eliminate time-consuming transfers, reduce risk of data loss, and keep high-throughput workflows moving. Remote access means researchers no longer need to be physically present at the system; they can connect remotely and monitor the acquisition and processing of their data in real time and quickly address any potential issues.

Designed as an open platform, the solution can support multiple instruments simultaneously, making it ideal for complex proteomics workflows and large-scale studies. It also makes it easy to work with a growing list of software tools and third-party applications, for data processing.

The Ardia Platform data-sync allows automated, bi-directional data transfer to other software packages — helping eliminate silos, avoiding manual data handling, and keeping your workflows flexible – meaning you can harness the power of an integrated environment while still working with your preferred applications.

What are the benefits?

Streamlined data management

• Automated data transfer. Store data and results in one secure, centralized environment with robust backup and archiving — minimizing the risk of data loss or manual error.

Faster processing, fewer bottlenecks

• Co-localization of data storage and processing capabilities means each injection’s processing can begin immediately after acquisition. This is essential for high-throughput proteomics or labs running large-cohort or multiplexed studies where data volumes can be huge.

Remote access & real-time monitoring

• Researchers can monitor runs, check processing status, and collaborate from anywhere — ideal for collaborative research environments where multiple researchers need access to the same data. Plus, user access controls enable secure collaboration without moving files outside your organization.

Powerful, automated analysis tools

• The Proteomics Software Solution offers advanced workflows including Thermo Scientific TMT (Tandem Mass Tag) quantification, cross-linking analysis for protein–protein interactions, and deep learning-powered algorithms like CHIMERYS and INFERYS to increase the number of identified peptides and proteins. The comprehensive suite of analytical tools supports various quantification methods, including label-free and SILAC, providing researchers with the flexibility to automate their analyses to specific experimental needs.

Cost efficiency & CHIMERYS on-premise

• CHIMERYS is delivered locally, saving on manual upload/download time, recurring license fees and improving performance compared to cloud service

Flexible integration

• Export your results easily to other analytical tools for further interpretation, quantification, or visualization. This flexibility supports open science, collaboration, and customized data analysis that fit your lab’s needs.

The future of proteomics is connected and automated

As proteomics research continues to evolve, you need proteomics software that stands at the forefront of innovation. The Proteomics Software Solution provides an integrated, automated environment, replacing fragmented, manual workflows with a secure solution designed to handle today’s high-throughput demands. The result? Faster insights, easier collaboration, streamlined data management, and the confidence to push your research further.

See what’s possible – Explore the Proteomics Software Solution or watch our recent webinar: Facilitating High-Throughput, Large Cohort Proteomic Analyses Using an Integrated Software Solution, to learn more

Visit us on LinkedIn: #Proteomics #ProteomicsSoftwareSolution #ArdiaPlatform #Automation

Zoe Julian

Zoe Julian is a Product Marketing Manager for Chromatography and Mass Spectrometry software at Thermo Fisher Scientific. With over 12 years' experience of working with chromatography and mass spectrometry techniques with a background in GC and GC-MS(/MS) organic environmental analysis, she has helped many laboratories and industries improve their workflows through a unique understanding of their challenges. Transitioning to a focus on Chromeleon CDS she has shown customers how software solutions can improve their productivity and support their day-to-day operations.