Author
Thermo Fisher Scientific
Thermo Fisher Scientific
A unique company dedicated to serving science helping our customers drive productivity and accelerate results. Through our premier brands – Thermo Scientific, Applied Biosystems, Invitrogen, Fisher Scientific and Unity Lab Services.
Tags
Article
Software
Product
Video
LinkedIn Logo

Reduce Sample Waste in the Lab Using Real-Time Data Evaluation with Automated Reactions

Tu, 27.1.2026
| Original article from: Thermo Fisher Scientific / Peter Zipfell
Reduce sample waste and prevent data loss in LC-MS analysis using real-time data evaluation with system suitability testing and intelligent run control in Chromeleon software.
Video placeholder
  • Photo: Thermo Fisher Scientific: Reduce Sample Waste in the Lab Using Real-Time Data Evaluation with Automated Reactions
  • Video: Chromatography & Mass Spectrometry Solutions: Chromatography & Mass Spectrometry Solutions

In the ever-evolving landscape of laboratory analysis, avoiding data loss and ensuring accurate results are of vital importance, but laboratories face many challenges to ensure precious sample is not wasted and analytical sequences run correctly the first time, keeping throughput as high as possible. These challenges can be associated with examples such as an analytical run coming to an abrupt halt, resulting in sample re-extraction, the need for repeat analysis due to a poor injection or a sample falling outside acceptable tolerances. In particular, unknown samples with analyte concentrations exceeding the upper limit of quantification (ULOQ), can compromise quantification accuracy and increase the risk of carryover to subsequent injections. To address these issues, software can provide automated system suitability testing and in-run decision making for more right first-time analyses.

Thermo Fisher Scientific: Reduce Sample Waste in the Lab Using Real-Time Data Evaluation with Automated ReactionsThermo Fisher Scientific: Reduce Sample Waste in the Lab Using Real-Time Data Evaluation with Automated Reactions

Enhancing data integrity with SST/IRC

The System Suitability Testing (SST) and Intelligent Run Control (IRC) functionality in Thermo Scientific Chromeleon software is designed to enable real-time monitoring and evaluation of key operational and data processing parameters. This capability allows laboratories to define specific thresholds and automatically respond to deviations, preventing potential issues such as carryover, sample waste and quantification inaccuracies. By automating the evaluation of critical operational conditions and data processing results, Chromeleon software ensures that both chromatography and MS systems operate consistently and within expected parameters, ultimately leading to more accurate and reliable analytical results.

Support for MS instruments

The SST/IRC functionality can be applied to Thermo Scientific mass spectrometers, including single quadrupole, triple quadrupole and HRAM MS. This versatility makes it an invaluable tool for clinical research and forensic toxicology laboratories, where maintaining the integrity and reliability of LC-MS datasets is crucial. The ability to define and execute automated responses to test case outcomes ensures that the system operates within expected parameters, saving precious sample and time for data review.

Real-time decision making

One of the standout features of the SST/IRC functionality is its ability to make real-time decisions based on predefined thresholds. For instance, if an unknown sample has very high analyte concentrations, the system can automatically trigger the “AutoDilution” function, adjusting the injection volume to ensure accurate quantification. This intelligent response helps mitigate the risk of carryover and maintains the integrity of subsequent injections.

Advancing laboratory performance

The SST/IRC capabilities in Chromeleon software provide a robust framework for maintaining the integrity and reliability of LC-MS datasets. By automating the evaluation of critical operational conditions and data processing results, you can enable real-time decision-making to address potential issues promptly. This not only safeguards the quality of the data but also enhances laboratory efficiency, reducing sample waste and minimizing data loss.

The integration of SST/IRC functionality represents a significant advancement in laboratory data management. As laboratories continue to face increasing demands for accuracy and efficiency, tools like SST/IRC will play a crucial role in ensuring reliable and high-quality analytical results. For more information on how Chromeleon software can enhance your laboratory operations, you can register for our latest webinar, Safeguard dataset quality in LC-MS analysis with system suitability testing and intelligent run control (SST/IRC) or visit Chromeleon Software-Targeted MS Quantitation.

  • Visit us on LinkedIn: #Chromeleon #ChromatographyDataSystem #MassSpectrometry #TargetedQuantitation
Peter Zipfell

For over 25 years, he has worked extensively with analytical hardware and software transitioning from LC-MS method development through HPLC technical support to chromatography data systems. His focus has always been to support our customers by delivering software solutions across multiple industries to enable them to improve their current workflows and increase productivity.

Thermo Fisher Scientific
LinkedIn Logo
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
Oligos Made Easy - Part 8: Sepapure oliGO
Article | Science and research

Oligos Made Easy - Part 8: Sepapure oliGO

Sepapure oliGO offers a robust mixed-mode solution for oligonucleotide analysis, combining hybrid silica technology, low backpressure, and reliable IP-RP performance.
KNAUER
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
News from LabRulezLCMS Library - Week 13, 2026
Article | Application

News from LabRulezLCMS Library - Week 13, 2026

This week we bring you application notes by Agilent Technologies, KNAUER and Shimadzu, brochure by Thermo Fisher Scientific and poster by Waters Corporation!
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
Oligos Made Easy - Part 8: Sepapure oliGO
Article | Science and research

Oligos Made Easy - Part 8: Sepapure oliGO

Sepapure oliGO offers a robust mixed-mode solution for oligonucleotide analysis, combining hybrid silica technology, low backpressure, and reliable IP-RP performance.
KNAUER
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
News from LabRulezLCMS Library - Week 13, 2026
Article | Application

News from LabRulezLCMS Library - Week 13, 2026

This week we bring you application notes by Agilent Technologies, KNAUER and Shimadzu, brochure by Thermo Fisher Scientific and poster by Waters Corporation!
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
Oligos Made Easy - Part 8: Sepapure oliGO
Article | Science and research

Oligos Made Easy - Part 8: Sepapure oliGO

Sepapure oliGO offers a robust mixed-mode solution for oligonucleotide analysis, combining hybrid silica technology, low backpressure, and reliable IP-RP performance.
KNAUER
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
News from LabRulezLCMS Library - Week 13, 2026
Article | Application

News from LabRulezLCMS Library - Week 13, 2026

This week we bring you application notes by Agilent Technologies, KNAUER and Shimadzu, brochure by Thermo Fisher Scientific and poster by Waters Corporation!
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
Oligos Made Easy - Part 8: Sepapure oliGO
Article | Science and research

Oligos Made Easy - Part 8: Sepapure oliGO

Sepapure oliGO offers a robust mixed-mode solution for oligonucleotide analysis, combining hybrid silica technology, low backpressure, and reliable IP-RP performance.
KNAUER
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
News from LabRulezLCMS Library - Week 13, 2026
Article | Application

News from LabRulezLCMS Library - Week 13, 2026

This week we bring you application notes by Agilent Technologies, KNAUER and Shimadzu, brochure by Thermo Fisher Scientific and poster by Waters Corporation!
LabRulez
tag
share
more
Other projects
GCMS
ICPMS
Follow us
FacebookX (Twitter)LinkedInYouTube
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike