Method Development of Proteolysis Targeting Chimera (PROTAC) Compound ARV-825 Forced Degradation Sample Using the Systematic Screening Protocol
Applications | 2024 | WatersInstrumentation
Proteolysis Targeting Chimeras (PROTACs) represent a novel therapeutic strategy by inducing selective protein degradation, offering advantages over traditional inhibitors. ARV-825, a PROTAC targeting BRD4, shows promise in treating various cancers. Understanding its forced degradation behavior is crucial for assessing stability, ensuring patient safety, and guiding formulation development.
This study aimed to develop a robust UPLC-MS method to characterize degradation products of ARV-825 under accelerated stress conditions. A systematic screening protocol was applied to expedite method development and achieve baseline resolution of ARV-825 and its degradants.
A combined forced degradation sample was prepared by subjecting ARV-825 to acid, base, thermal, and oxidative stress at 70 °C. Photolytic degradation was evaluated but showed no significant change. Degradation mixtures were quenched and pooled for analysis.
UPLC system and detectors:
Columns screened (MaxPeak Premier HPS hardware):
Mobile phases:
Data acquired with Empower 3 CDS.
pH screening identified low-pH formic acid conditions as optimal for retaining degradants. Column screening with acetonitrile revealed the HSS T3 phase as providing the best separation profile. Gradient optimization (0–70% B in 5.3 min) improved retention of early-eluting degradants and reduced cycle time. Comparison of MaxPeak Premier HPS hardware versus standard stainless-steel columns demonstrated superior peak shape, selectivity, and reproducibility with HPS technology due to minimized metal-analyte interactions.
Integration of high-throughput automated screening and novel stationary phase chemistries will further reduce development timelines. Advances in hybrid surface treatments and microfluidic LC-MS systems may enhance trace-level degradant detection and expand applicability to complex biologics.
Applying a systematic screening workflow combined with MaxPeak HPS technology enabled rapid development of a stability-indicating UPLC-MS method for ARV-825 forced degradation samples. The approach ensures reliable degradant identification and robust performance, supporting critical stability assessment in PROTAC drug development.
LC/MS, LC/SQ
IndustriesPharma & Biopharma
ManufacturerWaters
Summary
Significance of the Topic
Proteolysis Targeting Chimeras (PROTACs) represent a novel therapeutic strategy by inducing selective protein degradation, offering advantages over traditional inhibitors. ARV-825, a PROTAC targeting BRD4, shows promise in treating various cancers. Understanding its forced degradation behavior is crucial for assessing stability, ensuring patient safety, and guiding formulation development.
Objectives and Study Overview
This study aimed to develop a robust UPLC-MS method to characterize degradation products of ARV-825 under accelerated stress conditions. A systematic screening protocol was applied to expedite method development and achieve baseline resolution of ARV-825 and its degradants.
Methodology
A combined forced degradation sample was prepared by subjecting ARV-825 to acid, base, thermal, and oxidative stress at 70 °C. Photolytic degradation was evaluated but showed no significant change. Degradation mixtures were quenched and pooled for analysis.
Used Instrumentation
UPLC system and detectors:
- ACQUITY UPLC H-Class Plus with Quaternary Solvent Manager and Sample Manager FTN
- ACQUITY QDa Mass Detector (ESI+ full-scan and SIR)
Columns screened (MaxPeak Premier HPS hardware):
- BEH C18
- CSH Phenyl-Hexyl
- HSS PFP
- HSS T3
- BEH Shield RP18
- BEH C18 AX
Mobile phases:
- Water with formic acid
- Acetonitrile or methanol
Data acquired with Empower 3 CDS.
Main Results and Discussion
pH screening identified low-pH formic acid conditions as optimal for retaining degradants. Column screening with acetonitrile revealed the HSS T3 phase as providing the best separation profile. Gradient optimization (0–70% B in 5.3 min) improved retention of early-eluting degradants and reduced cycle time. Comparison of MaxPeak Premier HPS hardware versus standard stainless-steel columns demonstrated superior peak shape, selectivity, and reproducibility with HPS technology due to minimized metal-analyte interactions.
Benefits and Practical Applications
- Accelerated method development through a tiered systematic protocol.
- Baseline resolution of all ARV-825 degradants and main peak.
- Enhanced reproducibility and sensitivity using MaxPeak Premier HPS columns.
Future Trends and Opportunities
Integration of high-throughput automated screening and novel stationary phase chemistries will further reduce development timelines. Advances in hybrid surface treatments and microfluidic LC-MS systems may enhance trace-level degradant detection and expand applicability to complex biologics.
Conclusion
Applying a systematic screening workflow combined with MaxPeak HPS technology enabled rapid development of a stability-indicating UPLC-MS method for ARV-825 forced degradation samples. The approach ensures reliable degradant identification and robust performance, supporting critical stability assessment in PROTAC drug development.
References
- He L et al. ARV-825-Induced BRD4 Protein Degradation as a Therapy for Thyroid Carcinoma. Aging (Albany NY). 2020;4547–4557.
- Wu S et al. BRD4 PROTAC Degrader ARV-825 Inhibits T-Cell Acute Lymphoblastic Leukemia. Cancer Cell Int. 2021;21:230.
- Li Z et al. PROTAC Bromodomain Inhibitor ARV-825 Displays Anti-Tumor Activity in Neuroblastoma. Front Oncol. 2020;10.
- Sun X et al. PROTACs: Great Opportunities for Academia and Industry. Signal Transduct Target Ther. 2019;4:64.
- Liu Z et al. An Overview of PROTACs: A Promising Drug Discovery Paradigm. Mol Biomed. 2022;3:46.
- Sakamoto KM et al. PROTACs: Chimeric Molecules That Target Proteins for Ubiquitination and Degradation. Proc Natl Acad Sci USA. 2001;98(15):8554–8559.
- Delano M et al. Using Hybrid Surface Technology to Mitigate Analyte Interactions in UHPLC. Anal Chem. 2021;93:5773–5781.
- Walter TH et al. Modifying Metal Surfaces in HPLC to Prevent Analyte Adsorption. LCGC Supplements. 2022;28–34.
- Smith K, Rainville P. Utilization of MaxPeak HPS and Atlantis Premier BEH C18 AX for LC-MS Sensitivity. Waters App Note. 2020;720006745.
- Jung MC, Lauber MA. Demonstrating Improved Sensitivity with MaxPeak HPS Technology. Waters App Note. 2020;720007053.
- Zabala G et al. Improved Reproducibility for Acetaminophen Assay Using MaxPeak Premier Columns. Waters App Note. 2023;720007938.
- Boissel C et al. ACQUITY Premier Solution Improves UPLC-MS Analysis of Deferoxamine. Waters App Note. 2021;720007239.
- Maziarz M et al. Improving Effectiveness in Method Development with a Systematic Screening Protocol. Waters App Note. 2014;720005026.
- Berthelette KD et al. Method Development of Antibiotic Compounds Using a Systematic Screening Protocol. Waters App Note. 2021;720007352.
- Berthelette KD et al. Using a Systematic Screening Protocol and MaxPeak HPS to Develop UHPLC Method for Deferoxamine. Waters App Note. 2022;720007834.
- Hong P, McConville P. A Complete Solution for Systematic Screening Protocol in LC Method Development. Waters White Paper. 2014;720005268.
- Zelesky T et al. Pharmaceutical Forced Degradation Endpoints: A Scientific Rationale and Industry Perspective. J Pharm Sci. 2023;112:2948–2964.
Content was automatically generated from an orignal PDF document using AI and may contain inaccuracies.
Similar PDF
Degradation Products of ARV-825 Proteolysis Targeting Chimera (PROTAC) Compound: Isolation and Purification Using Analytical Scale Fraction Collection
2025|Waters|Applications
Application Note Degradation Products of ARV-825 Proteolysis Targeting Chimera (PROTAC) Compound: Isolation and Purification Using Analytical Scale Fraction Collection Margaret Maziarz, Paul Rainville, Stephanie N Harden Waters Corporation, United States Published on July 10, 2025 Abstract Proteolysis targeting chimeras (PROTACs)…
Key words
fraction, fractioncollection, collectionscale, scaleanalytical, analyticalusing, usingmanager, managerwfm, wfmprotac, protacprivacy, privacychimera, chimerapts, ptsprotacs, protacsdegradation, degradationfractionlynx, fractionlynxtreatment
Impurities Investigation of ARV-825 Proteolysis Targeting Chimera (PROTAC) Compound through Fraction Collection
2025|Waters|Posters
IMPURITIES INVESTIGATION OF ARV-825 PROTEOLYSIS TARGETING CHIMERA (PROTAC) COMPOUND THROUGH FRACTION COLLECTION Authors: Margaret Maziarz, Paul Rainville Affiliations: Waters Corporation, 34 Maple Street, Milford MA 01757 Mass-directed fraction collection Forced degradation sample The ARV-825 sample was dissolved in a 45:55…
Key words
tic, ticism, ismfraction, fractioncollection, collectiontimed, timedwfm, wfmprotacs, protacsapex, apexmanager, managermakeup, makeupsolvent, solventtime, timedirected, directedfractions, fractionsdegradation
Impurities Investigation of ARV-825 Proteolysis Targeting Chimera (PROTAC) Compound through Fraction Collection 
2025|Waters|Posters
IMPURITIES INVESTIGATION OF ARV-825 PROTEOLYSIS TARGETING CHIMERA (PROTAC) COMPOUND THROUGH FRACTION COLLECTION Authors: Margaret Maziarz, Paul Rainville Affiliations: Waters Corporation, 34 Maple Street, Milford MA 01757 Mass-directed fraction collection Forced degradation sample The ARV-825 sample was dissolved in a 45:55…
Key words
tic, ticism, ismfraction, fractioncollection, collectiontimed, timedwfm, wfmprotacs, protacsapex, apexmanager, managersolvent, solventmakeup, makeuptime, timedirected, directedfractions, fractionsdegradation
Method Development of Orlistat Forced Degradation Sample using MaxPeak™ Premier Columns and QDa™ Mass Detection
2024|Waters|Applications
Application Note Method Development of Orlistat Forced Degradation Sample using MaxPeak™ Premier Columns and QDa™ Mass Detection Kenneth D. Berthelette, Christopher Collins, Jamie Kalwood, Kim Haynes Waters Corporation Abstract New drug development requires a variety of testing to ensure safety…
Key words
orlistat, orlistatforced, forcedmethod, methoddegradation, degradationconditions, conditionsdegradants, degradantsmaxpeak, maxpeakqda, qdapremier, premierdevelopment, developmentdeferoxamine, deferoxaminesystematic, systematicacetonitrile, acetonitrilecolumns, columnsstationary