Rapid High-Throughput Amino Acid Analysis of GLP-1 Analogs
Applications | 2025 | WatersInstrumentation
GLP-1 analogs have emerged as vital peptide therapeutics for glycemic control and weight management, with expanding indications driving increased manufacturing demands. Reliable amino acid analysis is critical for verifying peptide composition, optimizing bioprocess parameters, and ensuring compliance with regulatory standards. Conventional hydrolysis protocols can require up to 24 hours, creating bottlenecks in quality control workflows.
This work presents a rapid, high-throughput amino acid analysis method for GLP-1 analogs, combining microwave-assisted acid hydrolysis with UPLC separation and pre-column derivatization using a commercial chemistry kit. The goal is to achieve complete peptide hydrolysis, derivatization, and quantitative analysis in under ten minutes while maintaining accuracy and reproducibility.
• Calibration standards spanning 10 to 500 µM were prepared in 0.1 N HCl for all amino acids, with adjusted ranges for cysteine.
• Exenatide samples were hydrolyzed in 6 N HCl at 160 °C under microwave irradiation for 20 minutes to ensure full digestion without excessive degradation of labile residues.
• Hydrolysates were neutralized, diluted, and derivatized using 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate (AQC) reagents following manufacturer guidelines.
• Separation was achieved on a 1.7 µm, 2.1 x 100 mm AccQ·Tag Ultra UPLC column at 45 °C with UV detection at 260 nm and a non-linear gradient optimized for baseline resolution of all amino acids in under ten minutes.
• ACQUITY Premier Binary UPLC System with column heater and sample manager
• AccQ·Tag Ultra Column and in-line filter
• Tunable UV detector at 260 nm
• Discover Prep microwave hydrolysis system (CEM)
• Empower Chromatography Data System for automated calibration, quantitation, and reporting
The non-linear gradient facilitated complete separation of critical isobaric pairs such as serine and arginine within ten minutes. Microwave-assisted hydrolysis at 160 °C for 20 minutes fully digested exenatide, as evidenced by the disappearance of the intact peptide peak, while minimizing degradation of sensitive residues. Automated calibration curves exhibited high linearity and reproducibility (area RSD <0.5%; retention time RSD <0.6%). Comparative analysis of two vendor samples revealed a proline insertion impurity in one lot, flagged automatically via custom limits in Empower CDS.
• Total analysis time under ten minutes accelerates QC throughput
• Turnkey chemistry kit simplifies method setup and reproducibility
• Microwave-assisted hydrolysis reduces sample preparation time from days to minutes
• Automated data processing and limit checking minimize manual errors and enhance regulatory compliance
Integration of UPLC-MS detection could extend this workflow to sequence confirmation and impurity profiling. Further automation of sample preparation, including robotic derivatization, will enable 24/7 high-throughput screening. Advances in reagent chemistry may yield even faster derivatization kinetics and improved stability for labile amino acids.
The combination of microwave-accelerated hydrolysis, fast UPLC separation with AQC derivatization, and automated data processing provides a robust, high-throughput solution for amino acid analysis of GLP-1 analogs in quality control environments. This approach significantly reduces turnaround times and enhances the reliability of peptide composition assessments.
Standards and chemicals, Sample Preparation, HPLC
IndustriesPharma & Biopharma
ManufacturerWaters
Summary
Importance of the Topic
GLP-1 analogs have emerged as vital peptide therapeutics for glycemic control and weight management, with expanding indications driving increased manufacturing demands. Reliable amino acid analysis is critical for verifying peptide composition, optimizing bioprocess parameters, and ensuring compliance with regulatory standards. Conventional hydrolysis protocols can require up to 24 hours, creating bottlenecks in quality control workflows.
Objectives and Overview of the Study
This work presents a rapid, high-throughput amino acid analysis method for GLP-1 analogs, combining microwave-assisted acid hydrolysis with UPLC separation and pre-column derivatization using a commercial chemistry kit. The goal is to achieve complete peptide hydrolysis, derivatization, and quantitative analysis in under ten minutes while maintaining accuracy and reproducibility.
Methodology
• Calibration standards spanning 10 to 500 µM were prepared in 0.1 N HCl for all amino acids, with adjusted ranges for cysteine.
• Exenatide samples were hydrolyzed in 6 N HCl at 160 °C under microwave irradiation for 20 minutes to ensure full digestion without excessive degradation of labile residues.
• Hydrolysates were neutralized, diluted, and derivatized using 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate (AQC) reagents following manufacturer guidelines.
• Separation was achieved on a 1.7 µm, 2.1 x 100 mm AccQ·Tag Ultra UPLC column at 45 °C with UV detection at 260 nm and a non-linear gradient optimized for baseline resolution of all amino acids in under ten minutes.
Instrumentation Used
• ACQUITY Premier Binary UPLC System with column heater and sample manager
• AccQ·Tag Ultra Column and in-line filter
• Tunable UV detector at 260 nm
• Discover Prep microwave hydrolysis system (CEM)
• Empower Chromatography Data System for automated calibration, quantitation, and reporting
Main Results and Discussion
The non-linear gradient facilitated complete separation of critical isobaric pairs such as serine and arginine within ten minutes. Microwave-assisted hydrolysis at 160 °C for 20 minutes fully digested exenatide, as evidenced by the disappearance of the intact peptide peak, while minimizing degradation of sensitive residues. Automated calibration curves exhibited high linearity and reproducibility (area RSD <0.5%; retention time RSD <0.6%). Comparative analysis of two vendor samples revealed a proline insertion impurity in one lot, flagged automatically via custom limits in Empower CDS.
Benefits and Practical Applications
• Total analysis time under ten minutes accelerates QC throughput
• Turnkey chemistry kit simplifies method setup and reproducibility
• Microwave-assisted hydrolysis reduces sample preparation time from days to minutes
• Automated data processing and limit checking minimize manual errors and enhance regulatory compliance
Future Trends and Applications
Integration of UPLC-MS detection could extend this workflow to sequence confirmation and impurity profiling. Further automation of sample preparation, including robotic derivatization, will enable 24/7 high-throughput screening. Advances in reagent chemistry may yield even faster derivatization kinetics and improved stability for labile amino acids.
Conclusion
The combination of microwave-accelerated hydrolysis, fast UPLC separation with AQC derivatization, and automated data processing provides a robust, high-throughput solution for amino acid analysis of GLP-1 analogs in quality control environments. This approach significantly reduces turnaround times and enhances the reliability of peptide composition assessments.
References
- Simeone J, Hong P. Instrument Considerations for Adaptation of Amino Acid Analysis Methods from ACQUITY UPLC to ACQUITY Premier Binary System. Waters Application Note 720007440; 2021.
- Martin K, Simeone J, Hong P. Adaptation of Amino Acid Analysis Methods to ACQUITY Premier Binary Fixed Loop System. Waters Application Note 720008073; 2023.
- Hewitson H, Wheat TE, Diehl D. Amino Acid Analysis of Pure Protein Hydrolysates with Waters UPLC. Waters Application Note 720002404; 2007.
- Yang J, Liu B, Rainville PD, Harden S. New Gradient Elution for Amino Acid Analysis in Pet Foods and Plant Proteins. Waters Application Note 720008700; 2025.
- USP. Biotechnology-derived Articles-Amino Acid Analysis <1052>. USP-NF; 2018.
- USP. Exenatide. USP-NF; 2017.
- Han D, Ippoliti S, Birdsall RE, Nyholm K. Accelerating Method Development and Manufacturing of GLP-1 Analogs with LC-UV/MS. Waters Application Note 720008800; 2025.
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