LCMS
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike
Organizer
Thermo Fisher Scientific
A unique company dedicated to serving science helping our customers drive productivity and accelerate results. Through our premier brands – Thermo Scientific, Applied Biosystems, Invitrogen, Fisher Scientific and Unity Lab Services.
Tags
Software
OMICS
Logo of LinkedIn

Proteome Discoverer Workshop (Data processing with CHIMERYS search engine)

RECORD | Already taken place Tu, 9.4.2024
Get updated with new features in Thermo Scientific™ Proteome Discoverer™ (PD) sw package, with primary focus on CHIMERYS search engine.
Go to the webinar
Pragolab: Proteome Discoverer Workshop

Pragolab: Proteome Discoverer Workshop

Data processing with CHIMERYS search engine

You are being invited to join a virtual Proteome Discoverer Workshop delivered via Microsoft Teams.

The workshop is designed to get current active users updated with new features in Thermo Scientific™ Proteome Discoverer™ (PD) sw package, with primary focus on CHIMERYS search engine. The on-line session will feature introduction to CHIMERYS, overview of its main parameters, recommended settings for different types of experiments, and hands-on exercises.

Having the most recent PD 3.1 version (Demo license sufficient) would be advantageous. Demo access to CHIMERYS Cloud service could also be obtained. Details will be provided shortly after the registration deadline, together with the links to the training session and download of the training materials.

Registration deadline April 3, 2024.

The sessions will be recorded, and recordings made available to all registered participants.

Please register using the link below.

Registration link

Agenda

Part 1

Introducing CHIMERYS search engine - Daniel Zolg/Martin Frejno (MSAID)
  • The problem of chimeric spectra
  • Spectrum-centric deconvolution of chimeric spectra
  • The CHIMERYS workflow
  • Exemplary results for DDA data
  • Contribution-based quantification in MS2
  • Exemplary results for PRM data
  • Exemplary results for DIA data
  • How to properly compare search engines

Part 2

Identifications with CHIMERYS - Michaela Scigelova (ThermoFisher Scientific)
  • CHIMERYS node in PD
  • Discussion of parameters
  • Search space considerations
  • Processing time considerations
  • Hands-on session (Hela sample, Q Exactive; Study setup; Sequest x CHIMERYS comparison)

Part 3

Quantitation with CHIMERYS - Michaela Scigelova (ThermoFisher Scientific)
  • Match-between-runs
  • CHIMERYS inclusion file
  • Hands-on session (DIA three-proteome mix, Exploris 240; Study setup; CHIMERYS results review)
  • Tips&Tricks&Bugs

Presenter: Martin Frejno

In his role as Chief Executive Officer, Martin is responsible for the long-term strategy of MSAID. He is based in Cologne, Germany.

Presenter: Daniel Zolg

In his role as Chief Operating Officer, Daniel oversees the operations at MSAID. He is based in Garching, Germany.

Presenter: Michaela Scigelova

provides customer support to Proteome Discoverer users. She has been working at Thermo Fisher Scientific at various roles since 2000. She is based in Bremen, Germany.

Thermo Fisher Scientific
 

Related content

Improved Lab Efficiency with the Agilent 18-Cell Changer Accessory

Technical notes
| 2024 | Agilent Technologies
Instrumentation
UV–VIS spectrophotometry
Manufacturer
Agilent Technologies
Industries
Others

Comprehensive Analysis of Hydrophilic Metabolites Using Shim-pack™ Mix-HILIC

Applications
| 2024 | Shimadzu
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ, Consumables, LC columns
Manufacturer
Shimadzu
Industries
Metabolomics

Alliance iS Bio HPLC System brochure

Brochures and specifications
| 2024 | Waters
Instrumentation
HPLC
Manufacturer
Waters
Industries
Pharma & Biopharma, Clinical Research

Quantitative Analysis of Legacy and Emerging PFAS in Semiconductor Lubricant Using Agilent 6475 Triple Quadrupole LC/MS

Applications
| 2024 | Agilent Technologies
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Agilent Technologies
Industries
Environmental, Energy & Chemicals

Shim-pack™ Mix-HILIC columns

Technical notes
| 2024 | Shimadzu
Instrumentation
Consumables, LC columns
Manufacturer
Shimadzu
Industries
Metabolomics
Other projects
Follow us
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike