Author
Phenomenex
Phenomenex
Phenomenex is a global technology leader committed to developing novel analytical chemistry solutions that solve the separation and purification challenges of researchers in industrial, government and academic laboratories.
Tags
Article
Academy
Video
LinkedIn Logo

Sample Pre-treatment Procedures for Bioanalytical Samples

We, 30.7.2025
| Original article from: Phenomenex
Bioanalytical samples often need pretreatment before SPE. Each matrix presents challenges like protein removal, red blood cell lysis, glucuronide hydrolysis, or tissue homogenization.
Video placeholder
  • Photo: Phenomenex: Sample Pre-treatment Procedures for Bioanalytical Samples
  • Video: Phenomenex: Solid Phase Extraction (SPE) Tutorial

Due to their nature, bioanalytical samples often require a pretreatment step prior to further cleanup by solid phase extraction (SPE). Each sample matrix poses its own unique challenges such as the removal of proteins from plasma and serum, the disruption of red blood cells in whole blood, hydrolysis of glucuronidated analytes in urine, and homogenization of tissue samples. This technical note outlines common sample pre-treatment procedures for bioanalytical samples.

Plasma/Serum

Plasma and serum pre-treatments are analyte dependent. If the analyte of interest is an acid, 2 % phosphoric acid can be used (20 µL 85 % H3PO4 to 1 mL of plasma or serum) to disrupt the drug-protein interaction. If the analyte of interest is basic, 0.1 M sodium hydroxide can be used to disrupt the drug-protein interaction. After addition of acid or base, the sample should be vortexed for 20-30 seconds followed by centrifugation. The supernatant is now ready for further analysis.

Whole Blood

There are several pre-treatment strategies that can be followed for whole blood. If the target analyte is present in red blood cells, a hemolysis step is necessary

  • Hemolysis: To 0.2 mL whole blood (spiked with analytes and internal standard) in a 1.2 mL centrifuge tube, add 400 µL of 2 % zinc sulfate/80 % methanol. Vortex for 10-20 seconds followed by centrifugation at 14,000 rpm for 10 minutes. Collect the supernatant for further analysis.
    Preparation of zinc sulfate/methanol: Into a 100 mL volumetric flask add 20 mL water and 3.6 g ZnSO4, 7H2O. After the solution is clear and the salt crystals have dissolved, add 100 % methanol. Refrigerate the solution at 2-8 °C for 7 days.
  • Osmotic breakdown: To 1 mL of whole blood add internal standard and 4 mL of distilled water. Mix/vortex and let stand for 5 minutes. Centrifuge at 670 g for 10 minutes and discard the pellet. Adjust the pH of the supernatant accordingly with the addition of a buffer solution.
  • Sonication: Sonicate 1 mL whole blood for 15 minutes at room temperature. Add 3-6 mL of an appropriate pH buffer (such as potassium phosphate buffer). Mix/vortex. Let stand for 5 minutes. Centrifuge at 670 g for 15 minutes. Analyze supernatant.

Note: A comparison of the above pre-treatment techniques for whole blood was performed for acidic, basic, and neutral drugs. Recoveries were generally the highest when the whole blood sample was diluted with buffer and subjected to physical denaturing (sonication) rather than chemical means. In fact, the sonication process disrupts the cell membranes to the extent that no clogging was observed when the procedure listed above was followed.1

Saliva

No hydrolysis is required for oral fluids and the generic protocol used for plasma/serum pre-treatment may be followed.

Urine

Enzymatic hydrolysis is necessary in case of conjugated forms (sulfated or glucuronide form) of the analyte present. Enzymatic hydrolysis requires specific pH (pH 4-5) and temperature ranges. An acid or base hydrolysis can be performed as well, depending on the stability of the compound.

  1. Enzymatic hydrolysis: To 500 µL sample (spiked with analyte and internal standard) add 100 µL acidic buffer (see below) and 20 µL beta-glucuronidase. Vortex for 5-6 seconds. Incubate in a water bath at 63 °C for 30 minutes. Transfer sample to a 96-well collection plate or autosampler vial. Seal and centrifuge for 10 minutes at 2,000 rpm.
    Preparation of acidic buffer (1.0 M acetate buffer, pH 4.0): Dissolve 3.0 g of glacial acetic acid and 4.1g of sodium acetate in a 1 L volumetric flask.
  2. Base hydrolysis: To 1 mL urine (spiked with analyte and internal standard) add 100 µL 10 N KOH. Mix, vortex, and hydrolyze for 20 minutes at 60 ˚C. Cool and adjust pH to 3.5- 4.0 (by adding 200 µL glacial acetic acid).
  3. Acid hydrolysis: To 1 mL urine add 0.25 mL HCl in a screw capped test tube. Screw the tube top on loosely and heat in a boiling water bath for 60 minutes. Adjust to pH 7 (or as needed) with 1.0 N NaOH.

Tissue

Homogenize with organic or aqueous solvent depending upon analyte solubility. Settle, decant, centrifuge or filter supernatant. Perform direct Matrix Solid Phase Dispersion (MSPD) extraction on tissue.

Phenomenex
LinkedIn Logo
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction
Article | Events

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction

ISC 2026 Short Course 7 explores supercritical fluid extraction (SFE) and chromatography (SFC), from CO₂ fundamentals to analytical and preparative applications.
International Symposium on Chromatography - (ISC)
tag
share
more
Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
You talk, we understand – The way out of the tower of Babel
Article | Science and research

You talk, we understand – The way out of the tower of Babel

Why a shared metrology vocabulary matters in analytical laboratories. This Eurachem guide clarifies key terms, reduces misunderstandings, and supports reliable, fit-for-purpose measurement results.
Eurachem
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction
Article | Events

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction

ISC 2026 Short Course 7 explores supercritical fluid extraction (SFE) and chromatography (SFC), from CO₂ fundamentals to analytical and preparative applications.
International Symposium on Chromatography - (ISC)
tag
share
more
Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
You talk, we understand – The way out of the tower of Babel
Article | Science and research

You talk, we understand – The way out of the tower of Babel

Why a shared metrology vocabulary matters in analytical laboratories. This Eurachem guide clarifies key terms, reduces misunderstandings, and supports reliable, fit-for-purpose measurement results.
Eurachem
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction
Article | Events

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction

ISC 2026 Short Course 7 explores supercritical fluid extraction (SFE) and chromatography (SFC), from CO₂ fundamentals to analytical and preparative applications.
International Symposium on Chromatography - (ISC)
tag
share
more
Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
You talk, we understand – The way out of the tower of Babel
Article | Science and research

You talk, we understand – The way out of the tower of Babel

Why a shared metrology vocabulary matters in analytical laboratories. This Eurachem guide clarifies key terms, reduces misunderstandings, and supports reliable, fit-for-purpose measurement results.
Eurachem
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
 

Related content

Analysis of Anti-Degradant Additive (6PPD) and its Transformation Product 6PPD-Quinone in Tire Rubber Using an Integrated HPLC System

Applications
| 2026 | Shimadzu
Instrumentation
HPLC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Performance Evaluation of Microbial Identification Using a Benchtop MALDI-TOF MS

Applications
| 2026 | Shimadzu
Instrumentation
MALDI, LC/MS, LC/TOF, Software
Manufacturer
Shimadzu
Industries
Pharma & Biopharma, Food & Agriculture

A Combined Method for Anionic, Cationic, and Zwitterionic PFAS using a Direct Injection UPLC™-MS/MS Method for Environmental Water Samples

Applications
| 2026 | Waters
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Waters
Industries
Environmental

Beyond the box: A ready-to-run workflow for quantitating 80 drugs of abuse in whole blood with the TSQ Certis Triple Quadrupole MS

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Thermo Fisher Scientific
Industries
Forensics

Mastering Single Cell Proteomics: Daily Excellence with μPAC Neo Plus Trap-and-Elute Workflow

Presentations
| 2026 | Thermo Fisher Scientific
Instrumentation
HPLC, LC/Orbitrap, LC/MS, LC/MS/MS
Manufacturer
Thermo Fisher Scientific
Industries
Proteomics
 

Related articles

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction
Article | Events

ISC 2026 Short Course 7 - Supercritical Fluids in Chromatography and Extraction

ISC 2026 Short Course 7 explores supercritical fluid extraction (SFE) and chromatography (SFC), from CO₂ fundamentals to analytical and preparative applications.
International Symposium on Chromatography - (ISC)
tag
share
more
Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer
Article | Product

Advancing Steroid Quantification: Unlocking Sensitivity and Selectivity with the Thermo Scientific Stellar Mass Spectrometer

A new paradigm in steroid quantification. Thermo Scientific Stellar MS combines PRM, MS³, and dual HCD/CID fragmentation to enhance sensitivity, selectivity, and method development efficiency.
Thermo Fisher Scientific
tag
share
more
You talk, we understand – The way out of the tower of Babel
Article | Science and research

You talk, we understand – The way out of the tower of Babel

Why a shared metrology vocabulary matters in analytical laboratories. This Eurachem guide clarifies key terms, reduces misunderstandings, and supports reliable, fit-for-purpose measurement results.
Eurachem
tag
share
more
LabRulez at analytica 2026
Article | Events

LabRulez at analytica 2026

Meet LabRulez at analytica 2026 in Munich - A1.506. Explore live portal demos, discover marketplace instruments and spare parts, and learn how our online platforms support analytical chemistry professionals.
LabRulez
tag
share
more
Other projects
GCMS
ICPMS
Follow us
FacebookX (Twitter)LinkedInYouTube
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike