LCMS
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike
Author
DataApex
DataApex
Since 1991 DataApex develops and manufactures chromatography data stations. DataApex is constantly striving to provide users with efficient and up-to-date tools for chromatography data processing.
Tags
Article
Product
Software
Video
LinkedIn Logo

Working with User Variables in Clarity Chromatography Software

Tu, 30.9.2025
| Original article from: DataApex
Step-by-step guide to working with user variables in Clarity. Learn how to set them in methods, analyses, and sequences, and use them in calculations and reports.
Video placeholder
  • Photo: DataApex: How to use User Variables in the custom calculations
  • Video: DataApex: How to use User Variables in the custom calculations

Introduction

User variables in Clarity Chromatography Software allow analysts to add custom parameters to chromatograms, which can then be applied in tailored calculations and reports. This article explains how to define and manage these variables, where they can be accessed, and how to effectively use them within methods, single analyses, and sequences.

Types of User Variables in Clarity

Clarity provides two distinct sets of user variables:

  1. Method User Variables
    • Defined within a chromatographic method.
    • Apply to all chromatograms measured with that method.
  2. Analysis User Variables
    • Defined for a single analysis or sequence.
    • Apply only to specific runs, allowing flexible annotation or parameterization.

Defining Method User Variables

  1. Open the desired method in Clarity.
  2. Navigate to the Advanced tab.
  3. In the Method User Variables section, three fields are available to assign names and values.
  4. Enter the required parameters and save the method.
  5. These values will now automatically appear in all chromatograms measured with this method.

Defining Analysis User Variables

Single Analysis

  1. Open the Single Analysis dialog.
  2. Go to the User Variables section.
  3. Enter names and values as needed.

Sequence

  1. In the Sequence window, the variable columns are hidden by default.
  2. Right-click anywhere in the table and select Setup Columns.
  3. Locate Analysis User Variables 1–3 in the list.
  4. Rename them if necessary and move them to the Shown section.
  5. Confirm with OK. The variable columns will now be visible and editable directly within the sequence table.

Viewing and Editing Variables in a Chromatogram

When a chromatogram is acquired with both method-defined and analysis-defined variables, both sets will be stored together.

Within the chromatogram window you can:

  • View the current variables,
  • Edit them if adjustments are needed,
  • Apply them in user column calculations.

Using User Variables in Calculations

User variables can be directly included in custom calculation columns, offering the following advantages:

  • Adding project-specific metadata to results,
  • Storing supplementary parameters directly within chromatograms,
  • Automating calculations dependent on user-defined values.

This capability significantly enhances reporting flexibility and analytical reproducibility.

Conclusion

User variables in Clarity provide a powerful way to enrich chromatographic data with additional, customizable parameters. By setting them at the method, analysis, or sequence level, analysts can streamline workflows, improve traceability, and adapt calculations to project-specific requirements. Proper use of these variables enables more efficient data management and reporting in chromatography laboratories.

DataApex
LinkedIn Logo
 

Related content

Overcoming Strong Solvent Effects in the Analysis of Vepdegestrant

Applications
| 2026 | Agilent Technologies
Instrumentation
HPLC
Manufacturer
Agilent Technologies
Industries
Pharma & Biopharma

Identification of Double Bond Positions and Relative Acyl Chain Positions in Egg Yolk Phosphatidylcholines Using OAD-TOF System

Applications
| 2026 | Shimadzu
Instrumentation
LC/MS, LC/MS/MS, LC/TOF, LC/HRMS
Manufacturer
Shimadzu
Industries
Food & Agriculture

High Molecular-Weight Polysaccharide Characterization by SEC-MALS Using GTxResolve™ 1000 and 2000 Å SEC Columns

Applications
| 2026 | Waters
Instrumentation
GPC/SEC, Consumables, LC columns
Manufacturer
Waters
Industries
Pharma & Biopharma, Food & Agriculture

Development and Optimization for a Comprehensive LC/MS/MS Method for the Detection of 74 PFAS Compounds

Applications
| 2026 | Agilent Technologies
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Agilent Technologies
Industries
Food & Agriculture

PFAS in Biota: Risk Context & Robust Analytical Solutions

Others
| 2026 | ALS Europe
Instrumentation
Laboratory analysis, LC/MS, LC/MS/MS
Manufacturer
Industries
Environmental
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Food Adulteration and How It Is Revealed by Analytical Chemistry
Article | Food

Food Adulteration and How It Is Revealed by Analytical Chemistry

Food adulteration threatens quality and consumer trust. Discover how HPLC and modern chromatographic systems from Watrex Praha help identify oil, honey, and wine adulteration with high confidence.
Watrex Praha
tag
share
more
Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria
Interview | Video

Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria

This podcast explores how chromatography (FPLC/SEC) and mass spectrometry support malaria drug discovery, from protein purification and QC to interaction studies and complex sample preparation.
Organomation
tag
share
more
 

Related content

Overcoming Strong Solvent Effects in the Analysis of Vepdegestrant

Applications
| 2026 | Agilent Technologies
Instrumentation
HPLC
Manufacturer
Agilent Technologies
Industries
Pharma & Biopharma

Identification of Double Bond Positions and Relative Acyl Chain Positions in Egg Yolk Phosphatidylcholines Using OAD-TOF System

Applications
| 2026 | Shimadzu
Instrumentation
LC/MS, LC/MS/MS, LC/TOF, LC/HRMS
Manufacturer
Shimadzu
Industries
Food & Agriculture

High Molecular-Weight Polysaccharide Characterization by SEC-MALS Using GTxResolve™ 1000 and 2000 Å SEC Columns

Applications
| 2026 | Waters
Instrumentation
GPC/SEC, Consumables, LC columns
Manufacturer
Waters
Industries
Pharma & Biopharma, Food & Agriculture

Development and Optimization for a Comprehensive LC/MS/MS Method for the Detection of 74 PFAS Compounds

Applications
| 2026 | Agilent Technologies
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Agilent Technologies
Industries
Food & Agriculture

PFAS in Biota: Risk Context & Robust Analytical Solutions

Others
| 2026 | ALS Europe
Instrumentation
Laboratory analysis, LC/MS, LC/MS/MS
Manufacturer
Industries
Environmental
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Food Adulteration and How It Is Revealed by Analytical Chemistry
Article | Food

Food Adulteration and How It Is Revealed by Analytical Chemistry

Food adulteration threatens quality and consumer trust. Discover how HPLC and modern chromatographic systems from Watrex Praha help identify oil, honey, and wine adulteration with high confidence.
Watrex Praha
tag
share
more
Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria
Interview | Video

Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria

This podcast explores how chromatography (FPLC/SEC) and mass spectrometry support malaria drug discovery, from protein purification and QC to interaction studies and complex sample preparation.
Organomation
tag
share
more
 

Related content

Overcoming Strong Solvent Effects in the Analysis of Vepdegestrant

Applications
| 2026 | Agilent Technologies
Instrumentation
HPLC
Manufacturer
Agilent Technologies
Industries
Pharma & Biopharma

Identification of Double Bond Positions and Relative Acyl Chain Positions in Egg Yolk Phosphatidylcholines Using OAD-TOF System

Applications
| 2026 | Shimadzu
Instrumentation
LC/MS, LC/MS/MS, LC/TOF, LC/HRMS
Manufacturer
Shimadzu
Industries
Food & Agriculture

High Molecular-Weight Polysaccharide Characterization by SEC-MALS Using GTxResolve™ 1000 and 2000 Å SEC Columns

Applications
| 2026 | Waters
Instrumentation
GPC/SEC, Consumables, LC columns
Manufacturer
Waters
Industries
Pharma & Biopharma, Food & Agriculture

Development and Optimization for a Comprehensive LC/MS/MS Method for the Detection of 74 PFAS Compounds

Applications
| 2026 | Agilent Technologies
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Agilent Technologies
Industries
Food & Agriculture

PFAS in Biota: Risk Context & Robust Analytical Solutions

Others
| 2026 | ALS Europe
Instrumentation
Laboratory analysis, LC/MS, LC/MS/MS
Manufacturer
Industries
Environmental
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Food Adulteration and How It Is Revealed by Analytical Chemistry
Article | Food

Food Adulteration and How It Is Revealed by Analytical Chemistry

Food adulteration threatens quality and consumer trust. Discover how HPLC and modern chromatographic systems from Watrex Praha help identify oil, honey, and wine adulteration with high confidence.
Watrex Praha
tag
share
more
Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria
Interview | Video

Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria

This podcast explores how chromatography (FPLC/SEC) and mass spectrometry support malaria drug discovery, from protein purification and QC to interaction studies and complex sample preparation.
Organomation
tag
share
more
 

Related content

Overcoming Strong Solvent Effects in the Analysis of Vepdegestrant

Applications
| 2026 | Agilent Technologies
Instrumentation
HPLC
Manufacturer
Agilent Technologies
Industries
Pharma & Biopharma

Identification of Double Bond Positions and Relative Acyl Chain Positions in Egg Yolk Phosphatidylcholines Using OAD-TOF System

Applications
| 2026 | Shimadzu
Instrumentation
LC/MS, LC/MS/MS, LC/TOF, LC/HRMS
Manufacturer
Shimadzu
Industries
Food & Agriculture

High Molecular-Weight Polysaccharide Characterization by SEC-MALS Using GTxResolve™ 1000 and 2000 Å SEC Columns

Applications
| 2026 | Waters
Instrumentation
GPC/SEC, Consumables, LC columns
Manufacturer
Waters
Industries
Pharma & Biopharma, Food & Agriculture

Development and Optimization for a Comprehensive LC/MS/MS Method for the Detection of 74 PFAS Compounds

Applications
| 2026 | Agilent Technologies
Instrumentation
LC/MS, LC/MS/MS, LC/QQQ
Manufacturer
Agilent Technologies
Industries
Food & Agriculture

PFAS in Biota: Risk Context & Robust Analytical Solutions

Others
| 2026 | ALS Europe
Instrumentation
Laboratory analysis, LC/MS, LC/MS/MS
Manufacturer
Industries
Environmental
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Food Adulteration and How It Is Revealed by Analytical Chemistry
Article | Food

Food Adulteration and How It Is Revealed by Analytical Chemistry

Food adulteration threatens quality and consumer trust. Discover how HPLC and modern chromatographic systems from Watrex Praha help identify oil, honey, and wine adulteration with high confidence.
Watrex Praha
tag
share
more
Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria
Interview | Video

Affinity, Gel Filtration, Size Exclusion Chromatography: Repurposing Kinase Inhibitors for Malaria

This podcast explores how chromatography (FPLC/SEC) and mass spectrometry support malaria drug discovery, from protein purification and QC to interaction studies and complex sample preparation.
Organomation
tag
share
more
Other projects
GCMS
ICPMS
Follow us
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike